There is no better way to welcome fall than with these Pumpkin Cream Cheese Muffins! A moist, tender, ultra pumpkin-y muffin, filled with sweetened cream cheese, and topped with cinnamon sugar crunch topping! They are irresistible! If it’s too hot where you are, these muffins are guaranteed to make the leaves start falling off your trees. 

pumpkin cream cheese muffins

This post for Pumpkin Cream Cheese Muffins was originally published on November 10, 2011. New photos and muffin baking tips were added on September 21, 2018. 

If you ever get the chance, I highly recommend watching foreigners watch classic movies.  Eric and I made a reference to Darth Vader once in front of Huy, a friend of ours from Vietnam.  It slowly dawned on us that Huy had no knowledge whatsoever of Star Wars, a realization most shocking to Eric, who is possibly the biggest Star Wars geek ever.  (Actually probably not.  There are some real Star Wars freaks out there.)

pumpkin muffins with cream cheese filling

And so a Star Wars marathon ensued. Every week or so we would get a bunch of food and people together and watch the movies, starting with the classics of course.  I’ve seen those movies a dozen times at least, but I can’t tell you how awesome it was to watch someone else watch it for the first time.

pumpkin cream cheese

You should have seen Huy’s face when Vader tells Luke that he is his father.  Huy turned to us, complete disbelief on his face, and said, “You’re joking.  He’s joking right?  This is not real?”

A few weeks ago we introduced Huy to The Princess Bride.  I guess he didn’t know it was supposed to be funny, because while I was cracking up and quoting lines (Anybody want a peanut?) he was just watching, stony faced, waiting for the story to pick up.

cream cheese muffins

Maybe if I didn’t have so many memories attached to movies from my childhood I wouldn’t think they were so great.  Once we were having a family party for someone’s birthday.  My brother Nathan was about  4 or 5 I think, and he was sword fighting with my cousin.  Nathan was Inigo, Tony was Count Rugen.  There must have been a lull in the conversation, because everyone in the room heard Nate deliver his final line: I want my father back, you son of a–! 

pumpkin cream cheese

Except he really said it, as he slashed Tony through the armpit.  Try explaining to a 4 year old that even though 25 people just erupted in laughter, it is not appropriate to use that kind of language.

I digress.  Back to the food.  I think pretty much any dessert could be made 10 times better by adding a cream cheese filling or layer.  Cupcakes?  Check.  Pie? Check. French Toast Casserole? Check. These pumpkin cream cheese muffins?  Double check.  Tender, super tall muffin, with sweetened cream cheese in the middle means there is never a boring bite. And of COURSE there’s streusel on top. Seriously what is the point of a muffin without streusel?

This recipe makes 24 pumpkin cream cheese muffins, and since it is just me, Eric, and wee little Charlotte (who has yet to taste any dessert) I decided to leave a few out and put the rest in the freezer for later.  Apparently that was a mistake because they were gone within 3 days.

How to make Pumpkin Cream Cheese Muffins

pumpkin cream cheese muffins

pumpkin cream cheese muffins

pumpkin cream cheese muffins

pumpkin cream cheese

UPDATE! I’ve learned a lot about muffin baking in the 7 years since I published this post! Here are my best muffin tips for the TALLEST, domiest (that’s a word right?), dreamiest bakery style muffins of your life. You can make incredible muffins at home, I promise! Here are the secrets:

  • Spray the top of your muffin pan with nonstick spray so the muffin top will pop out easily.
  • Use paper liners
  • Fill the muffin batter almost to the top of the muffin liner. Yes, really. Trust me!
  • Bake at a super high temperature (425 F) for 5-6 minutes until the muffins have risen over the top of the pan. Then lower the temperature to 350 without opening the oven door and finish baking.
  • Pop the muffins out of the pan 1-2 minutes after removing from the oven (yes, when they are burning hot) so that the bottoms don’t get soggy.

pumpkin cream cheese muffins

That’s it! You can use these rules with basically any muffin batter. The high temperature to start is the key to tall fluffy muffins.

Pumpkin Cream Cheese Muffins

Here is my original photo of these muffins, taken back in November 2011. This was one of the first recipes I posted on my blog! It’s a winner guys!

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One year ago: Sweet Potato Black Bean Enchiladas
Four years ago: Blackberry Cake with Coconut Cream Cheese Frosting << all time favorite.
Five years ago: Double Layer Pumpkin Cheesecake

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Pumpkin Cream Cheese Muffins

Yields 24 muffins     adjust servings

There is no better way to welcome fall than with these Pumpkin Cream Cheese Muffins! A moist, tender, ultra pumpkin-y muffin, filled with sweetened cream cheese, and topped with cinnamon sugar crunch topping! They are irresistible! If it's too hot where you are, these muffins are guaranteed to make the leaves start falling off your trees. 


For the filling

  • 1 (8 ounce) package cream cheese, softened
  • 1 cup powdered sugar

For the muffins

  • 4 large eggs
  • 2 cups granulated sugar
  • 2 cups pumpkin puree (or a 15 oz can will work fine)
  • 1 and 1/4 cups vegetable oil
  • 3 cups all-purpose flour, spooned and leveled
  • 1 teaspoon ground cinnamon
  • 1 teaspoon ground nutmeg
  • 1 teaspoon ground cloves
  • 4 teaspoon pumpkin pie spice
  • 1 teaspoon salt
  • 1 and 1/2 teaspoons baking soda

For the crumb topping

  • 1/2 cup + 2 tablespoons granulated sugar
  • 1/3 cup all purpose flour
  • 2 teaspoons ground cinnamon
  • 6 tablespoons cold butter, cut into pieces


  1. In a large bowl or stand mixer, beat together the cream cheese and powdered sugar on medium speed until blended and smooth. Make sure to scrape the sides and bottom.
  2. Lay out a large piece of plastic wrap. Use a spatula to transfer the cream cheese mixture onto the plastic wrap in a log shape, about 1 and 1/2 inches in diameter.
  3. Smooth the plastic wrap tightly around the log, sealing the ends well. You can reinforce with more plastic wrap or foil if you want. Transfer to the freezer and chill at least 2 hours, or overnight. You want the cream cheese log to be firm enough to slice.
  4. To make the muffins, spray the tops of 2 muffin pans with nonstick spray. (Don't focus on spraying the inside of the muffin wells, just grease the top so that the muffin tops will come off the pan nicely.)
  5. Fill each tin with paper cupcake liners.
  6. In a large bowl or stand mixer, beat the eggs until blended. Add 2 cups sugar, the pumpkin puree and the oil. Mix on medium-low speed until blended, scraping the sides and bottom if necessary.
  7. Add 3 cups of spooned and leveled flour, but do not mix it in yet. Make a small well in the flour, and add the cinnamon, nutmeg, cloves, pumpkin pie spice, salt and baking soda. Use a small spoon to stir it into a flour a bit.
  8. Use a large spatula to mix the wet and dry ingredients together. You can use the mixer if you want, just be very careful not to over mix. Only stir until the flour has barely been incorporated. Make sure there are no liquid-y parts, and remember to scrape the sides and bottom well.
  9. Cover and put the muffin batter into the fridge to rest for about 20 minutes.
  10. Preheat your oven to 425 degrees F. 
  11. Time to make the crumb topping. In a medium bowl, combine 1/2 cup plus 2 tablespoons white sugar, 1/3 cup flour and 2 teaspoons cinnamon; whisk to blend. Add in the cold butter pieces and cut into the dry ingredients with a pastry blender or a fork until the mixture is coarse and crumbly. You could also use your hands to incorporate the butter. The mixture should look like coarse sand with pea-size chunks of butter throughout.
  12. To assemble the muffins, fill each muffin well with a tablespoon of chilled batter, just enough to cover the bottom of the liner.
  13. Slice the log of frozen cream cheese filling into 24 equal pieces. Place a slice of the cream cheese mixture into each muffin well.
  14. Divide the remaining batter among the muffin cups. Fill the batter nearly to the top of the liner; there should only be between 1/4 and 1/8 inch of space at the top. 
  15. Sprinkle about a tablespoon of the crumb topping over each muffin. Chill the assembled muffins if there is any time lapse before you bake. 
  16. Bake for 6 minutes at 425 degrees.
  17. After 6 minutes, without opening the oven door, turn on your oven light and look at the muffins. They should have risen about 1/4 inch above the edge of pan by now. If not, leave them in 1 minute longer at 425. 
  18. Once the muffins have puffed over the edge of the pan, lower the temperature to 350 degrees F. DO NOT OPEN THE OVEN DOOR! Seriously. 
  19. Once you have lowered the heat to 350, bake for another 13-15 minutes. The muffins should not be shiny in the center, and a toothpick inserted should come out with no wet batter on it. 
  20. Remove from the oven and place on a wire rack to cool for 2 minutes. 
  21. Use a butter knife to help loosen the edges of the muffins, and remove to a wire rack to cool. I know they are still very hot after 2 minutes, but taking them out of the pan right away will keep the muffins from getting soggy. 
  22. Eat one muffin as soon as humanly possible considering how hot they are, then let the rest cool completely on the wire rack.
  23. Store covered on the fridge for 1-2 days, after that refrigerate them. 
  24. These muffins (and all muffins!) freeze very well. Once cool, place in a ziplock bag and freeze for up to 2-3 months. Let thaw in the closed bag on the counter. Warm up in the microwave for 10-20 seconds to live your best life. 


If you make this recipe, share it on Instagram using the hashtag #TheFoodCharlatan so I can see it!

Here are some other pumpkin recipes you will love!

Easy Pumpkin Pie Cake << It’s like all the best parts about pumpkin pie…in cake form. Plus it’s EASY to boot.

Easy Pumpkin Pie Cake from The Food Charlatan

Butterscotch Pumpkin Cake << I call this a cake, but it barely qualifies. It’s got more of a brownie texture. IT’S SO GOOD. Personal fav.

Butterscotch Pumpkin Cake |

Pumpkin Oatmeal White Chocolate Chip Cookies << this is my first blog post ever! Good times. GOOD COOKIES. oh yeah.

Pumpkin Oatmeal White Chocolate Chip Cookies from The Food Charlatan

If you’re looking for more show stopper muffins, try these Bran Muffins with Buttery Molasses Glaze. They are seriously amazing.


More muffins from friends you will love!

Pecan Pie Muffins from Cookie Rookie
Strawberry Cheesecake Streusel Muffins from A Family Feast
Gingerbread Cream Cheese Muffins from All Day I Dream About Food